rs27544024 SNP Detail

Summary

• ID
  rs27544024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTAACTG TAGGGAGGGG GTGGTAGAGA TGCTCAGGCC
  TATAACTGGA GCCCCAGCCG GCATAGCCAC TGACTCTTTG TCCCCTGGGT TCCTGTTCTC
  Y
  AAGTTGTACT AAGTGAATCC AGTGGAGGGA GTGGCCAGCC CTAGCTGGGC TGACATTCTC
  TGTCTCAGCT GGGTCAGGGG AGCCTCAATG GGGGCGAGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762650	NES09166372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544024					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762650	NES09166372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	1340 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	494 bp downstream
Tssr39535	transcription start site region 39535	623 bp upstream
Tssr39536	transcription start site region 39536	706 bp upstream
Tssr39537	transcription start site region 39537	996 bp upstream
Tssr43866	transcription start site region 43866	715 bp downstream
Tssr43867	transcription start site region 43867	775 bp downstream
Tssr43868	transcription start site region 43868	811 bp downstream
Tssr43869	transcription start site region 43869	886 bp downstream
Tssr43870	transcription start site region 43870	1039 bp downstream
Tssr43871	transcription start site region 43871	1087 bp downstream
Tssr43872	transcription start site region 43872	1117 bp downstream
Tssr43873	transcription start site region 43873	1140 bp downstream
Tssr43874	transcription start site region 43874	1170 bp downstream
Tssr43875	transcription start site region 43875	1768 bp downstream
Tssr43876	transcription start site region 43876	1795 bp downstream
Ubxn11	UBX domain protein 11	128 bp downstream