rs27544025 SNP Detail

Summary

• ID
  rs27544025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG TGCCGCCCCT GACATAAGCT
  Y
  CACAAGGCTC TCCAGAGAGG GGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762651	NES09166371	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		T	C	C	T		T	C	C	T		C
ss45656299	mCV24805094	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		C
ss147518499	ENSMUSSNP1142830	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321345444	CHEV_4_133682699	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544025					SNP	C	C	C	C	C	C	T	T	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762651	NES09166371	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	1468 bp proximal
Rr601575	regulatory region 601575	1945 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	622 bp downstream
Tssr39535	transcription start site region 39535	751 bp upstream
Tssr39536	transcription start site region 39536	834 bp upstream
Tssr39537	transcription start site region 39537	1124 bp upstream
Tssr43866	transcription start site region 43866	843 bp downstream
Tssr43867	transcription start site region 43867	903 bp downstream
Tssr43868	transcription start site region 43868	939 bp downstream
Tssr43869	transcription start site region 43869	1014 bp downstream
Tssr43870	transcription start site region 43870	1167 bp downstream
Tssr43871	transcription start site region 43871	1215 bp downstream
Tssr43872	transcription start site region 43872	1245 bp downstream
Tssr43873	transcription start site region 43873	1268 bp downstream
Tssr43874	transcription start site region 43874	1298 bp downstream
Tssr43875	transcription start site region 43875	1896 bp downstream
Tssr43876	transcription start site region 43876	1923 bp downstream
Ubxn11	UBX domain protein 11	within coordinates