rs27544026 SNP Detail

Summary

• ID
  rs27544026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133853654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGTGGAGA CACCTGCCTT GGCTTCTGAG CGGCAGAGGT
  GAGGGCGAGG CAGAGAGATG GGAGCAGGGC GGAGAGGAAA GGACCAGGGA GCTGGGGAGC
  R
  CTGAAGGCCT CTGGATCTGC AGGAGCCAGG AGTCACCTGA CATGCCAATG CCTCTGCTCT
  CCATGCTTCG CATCAAGTCC GAGAACGGAG AGCAGGCCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762652	NES09166370	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544026					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762652	NES09166370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133853654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	1909 bp proximal
Rr367739	regulatory region 367739	1898 bp downstream
Rr601571	regulatory region 601571	1605 bp distal
Rr601574	regulatory region 601574	1725 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1063 bp downstream
Tssr39534	transcription start site region 39534	1785 bp downstream
Tssr39535	transcription start site region 39535	1192 bp upstream
Tssr39536	transcription start site region 39536	1275 bp upstream
Tssr39537	transcription start site region 39537	1565 bp upstream
Tssr43866	transcription start site region 43866	1284 bp downstream
Tssr43867	transcription start site region 43867	1344 bp downstream
Tssr43868	transcription start site region 43868	1380 bp downstream
Tssr43869	transcription start site region 43869	1455 bp downstream
Tssr43870	transcription start site region 43870	1608 bp downstream
Tssr43871	transcription start site region 43871	1656 bp downstream
Tssr43872	transcription start site region 43872	1686 bp downstream
Tssr43873	transcription start site region 43873	1709 bp downstream
Tssr43874	transcription start site region 43874	1739 bp downstream
Ubxn11	UBX domain protein 11	within coordinates