rs27544027 SNP Detail

Summary

• ID
  rs27544027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133853487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGGCGG GCTTGTTTCC
  CACGCTGGAC TTGGAGAATG ACAATGTCAC CGTCCAGAGC CTCCTTTCCT TTTCTTTTCT
  TCTTGGGCCT CAGCTGACAC AGAACACCTC AGCTCTTTAG CTCACTGGTC CCATCTATCC
  CTGCTCAGAG ATGAGCCAGT CCTCCCTGAG GGCGGAGGGA ATGATTTAGG TGAGACCTAG
  R
  CTCCAGCCAC TCTCCATGGC TGCCTTCCAG AACTGCTGCC CAATGCCTGC CCGGATCCAG
  GAGATCATAG TGGAGACACC TGCCTTGGCT TCTGAGCGGC AGAGGTGAGG GCGAGGCAGA
  GAGATGGGAG CAGGGCGGAG AGGAAAGGAC CAGGGAGCTG GGGAGCGCTG AAGGCCTCTG
  GATCTGCAGG AGCCAGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762653	NES09166369	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544027					SNP	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762653	NES09166369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133853487 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367739	regulatory region 367739			1731 bp downstream
Rr601571	regulatory region 601571			1438 bp distal
Rr601574	regulatory region 601574			1558 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3			1230 bp downstream
Tssr39534	transcription start site region 39534			1618 bp downstream
Tssr39535	transcription start site region 39535			1359 bp upstream
Tssr39536	transcription start site region 39536			1442 bp upstream
Tssr39537	transcription start site region 39537			1732 bp upstream
Tssr43866	transcription start site region 43866			1451 bp downstream
Tssr43867	transcription start site region 43867			1511 bp downstream
Tssr43868	transcription start site region 43868			1547 bp downstream
Tssr43869	transcription start site region 43869			1622 bp downstream
Tssr43870	transcription start site region 43870			1775 bp downstream
Tssr43871	transcription start site region 43871			1823 bp downstream
Tssr43872	transcription start site region 43872			1853 bp downstream
Tssr43873	transcription start site region 43873			1876 bp downstream
Tssr43874	transcription start site region 43874			1906 bp downstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant