rs27544028 SNP Detail

Summary

• ID
  rs27544028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133853253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAT TCTGTTCCCT TTCAGATGAC
  Y
  GCAGGCTAGG TTAGGGCCCC AAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762654	NES09166368	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T		T	C	C	T		C
ss147518489	ENSMUSSNP3214147	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321345442	CHEV_4_133681857	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544028					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762654	NES09166368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133853253 () rs orientation: forward

Symbol	Name	Function Class
Rr367739	regulatory region 367739	1497 bp downstream
Rr601571	regulatory region 601571	1204 bp distal
Rr601572	regulatory region 601572	1873 bp distal
Rr601573	regulatory region 601573	1807 bp distal
Rr601574	regulatory region 601574	1324 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1464 bp downstream
Tssr39534	transcription start site region 39534	1384 bp downstream
Tssr39535	transcription start site region 39535	1593 bp upstream
Tssr39536	transcription start site region 39536	1676 bp upstream
Tssr39537	transcription start site region 39537	1966 bp upstream
Tssr43866	transcription start site region 43866	1685 bp downstream
Tssr43867	transcription start site region 43867	1745 bp downstream
Tssr43868	transcription start site region 43868	1781 bp downstream
Tssr43869	transcription start site region 43869	1856 bp downstream
Ubxn11	UBX domain protein 11	within coordinates