rs27544739 SNP Detail

Summary

• ID
  rs27544739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136886909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCG ACTTTCAGGC TTGCTACAAG
  K
  TGTTTGCGCT CCACTTTGAA TGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37773458	NES09143899	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	T		G	G	T	G		T
ss147596837	ENSMUSSNP1478455	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss321361815	CHEV_4_136715513	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544739					SNP	G	T	T	T	T	T	G	T	T	T	T	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773458	NES09143899	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136886909 () rs orientation: forward

Symbol	Name	Function Class
Gm13003	predicted gene 13003	within coordinates
Gm69004	predicted gene, 69004	653 bp upstream
Rr92604	regulatory region 92604	1108 bp distal
Rr92605	regulatory region 92605	892 bp proximal
Rr96753	regulatory region 96753	within coordinates
Rr96754	regulatory region 96754	445 bp proximal