rs27544744 SNP Detail

Summary

• ID
  rs27544744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136886689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT CTTGCCTGCC ACACAGTAGG
  Y
  GCTCAATAAA TGGTCATTAT TAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37773463	NES09143894	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C	C	C	T
ss147596822	ENSMUSSNP3093817	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27544744					SNP	C	C	T	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773463	NES09143894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136886689 () rs orientation: forward

Symbol	Name	Function Class
Gm13003	predicted gene 13003	within coordinates
Gm69004	predicted gene, 69004	873 bp upstream
Rr92604	regulatory region 92604	888 bp distal
Rr92605	regulatory region 92605	1112 bp proximal
Rr96753	regulatory region 96753	58 bp proximal
Rr96754	regulatory region 96754	665 bp proximal