rs27544752 SNP Detail

Summary

• ID
  rs27544752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136885516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACAGGAA CACACAGGAG
  GCAGTGGTCC ATAGGACCTG GAGCCTGGCT GAGCAGTCAG ATAGCCCCAT CCAACCTGAT
  GCAGTACCCA GAGACCTGAC CAGACAGGTT TCAGCAGCAA GCAGCCTCTA CCTCTGGCCT
  CGGCTTTCTC ATTGACCATA GGAGGGTGTC AGGTAGAGCA GCCCCAAGGG TGCCACCATG
  Y
  TGACAGTGAC TTTGAACAGT GAAACAGCAA GCTGGCCTCC GGAAGGCATT CACCCTGGGC
  CTCCTGATGT CCTTGGCTCT AGCCAAATGA ACGCAGTAAA TCTCCAGCCT CAGAGGCCTG
  CTTTCCGCCC TCACCCTCCC CTCTGATGGC TCACACTTTC TCTGCTTTCA GGAGGTGTTT
  TTCAAGCACC CCCTTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37773471	NES09143886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544752					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37773471	NES09143886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136885516 () rs orientation: forward

Symbol	Name	Function Class
Gm13003	predicted gene 13003	877 bp downstream
Rr92603	regulatory region 92603	915 bp distal
Rr92604	regulatory region 92604	84 bp proximal
Rr96753	regulatory region 96753	1231 bp proximal
Rr96754	regulatory region 96754	1838 bp proximal