rs27545378 SNP Detail

Summary

• ID
  rs27545378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137649294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC TGTACTTCAT GCCCTAGAGC
  Y
  TTTGTGTGTT TCTGTTGTGC ATGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770497	NES09146715	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T		C	C	T	T		T
ss45672829	mCV24782601	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		T
ss147625712	ENSMUSSNP4339175	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321368941	CHEV_4_137477898	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545378					SNP	C	C	T	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770497	NES09146715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137649294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ece1	endothelin converting enzyme 1			Intron
				Noncoding-Transcript-Variant
Rr602779	regulatory region 602779			746 bp distal
Rr602780	regulatory region 602780			85 bp distal
Tssr39794	transcription start site region 39794			1222 bp downstream
Tssr39795	transcription start site region 39795			1205 bp downstream
Tssr39796	transcription start site region 39796			1153 bp downstream
Tssr39797	transcription start site region 39797			1096 bp downstream
Tssr39798	transcription start site region 39798			1063 bp downstream