rs27545379 SNP Detail

Summary

• ID
  rs27545379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137649264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC TTCCAGGGCA TGCCAGCACC
  R
  GGGAAGGACT GTACTTCATG CCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770498	NES09146714	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	A	G	G	G		A	A	G	G		G
ss45645422	mCV24782602	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss147625706	ENSMUSSNP4405364	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321368940	CHEV_4_137477868	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545379					SNP	A	A	G	G	G	A	G	A	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770498	NES09146714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137649264 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602779	regulatory region 602779	716 bp distal
Rr602780	regulatory region 602780	55 bp distal
Tssr39794	transcription start site region 39794	1192 bp downstream
Tssr39795	transcription start site region 39795	1175 bp downstream
Tssr39796	transcription start site region 39796	1123 bp downstream
Tssr39797	transcription start site region 39797	1066 bp downstream
Tssr39798	transcription start site region 39798	1033 bp downstream