rs27545380 SNP Detail

Summary

• ID
  rs27545380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137649174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG ACTGGGTGCA GAGGCTGCAT
  Y
  GGCTCACGGG TGTCCAGGTT TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770499	NES09146713	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C	C	T	C	T	C	C	C	C	C
ss45602671	mCV24782603	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T
ss147625703	ENSMUSSNP1817232	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545380					SNP	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770499	NES09146713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137649174 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602779	regulatory region 602779	626 bp distal
Rr602780	regulatory region 602780	within coordinates
Tssr39794	transcription start site region 39794	1102 bp downstream
Tssr39795	transcription start site region 39795	1085 bp downstream
Tssr39796	transcription start site region 39796	1033 bp downstream
Tssr39797	transcription start site region 39797	976 bp downstream
Tssr39798	transcription start site region 39798	943 bp downstream