rs27545381 SNP Detail

Summary

• ID
  rs27545381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137649078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT CTCCTCACAC ATGCGACTTA
  Y
  TTCTTCCTCC CTGGAGCCCT GTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770500	NES09146712	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	T	T	C	T		T	T	C	C		C
ss45710423	mCV24782610	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T
ss147625696	ENSMUSSNP4232205	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321368939	CHEV_4_137477682	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545381					SNP	T	T	C	C	T	T	C	T	T	C	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770500	NES09146712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137649078 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602779	regulatory region 602779	530 bp distal
Rr602780	regulatory region 602780	within coordinates
Tssr39794	transcription start site region 39794	1006 bp downstream
Tssr39795	transcription start site region 39795	989 bp downstream
Tssr39796	transcription start site region 39796	937 bp downstream
Tssr39797	transcription start site region 39797	880 bp downstream
Tssr39798	transcription start site region 39798	847 bp downstream