rs27545390 SNP Detail

Summary

• ID
  rs27545390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137647768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCACAC CCTCCGTTTC
  CCCTCATTGT GCTTTCTTTC CTGTTTAGCC AGATTACAGG GGCCTGGCAC ATTTTTCCCC
  CCTAGAGGAC CTGCATGAAT GGAGATATTA TTTCGCCTCT TGTCTTCCCT GACCATCCCC
  TGAGACCCAG GTCTCACTCA CTGGTGGGCT CCAGAATCTA TTTCCTATCT CAGTCCTACC
  Y
  GCTCAGCTAC GAGAGAAGTG ACCAGGGATC TCGGTTTTAT TGTTTGTCAA AAGAGAGGCA
  TCGAGGCAGC CCTGATAGGA TTAGAAAGAC CAAATGGTCT GAGCTGTTCC CACTTGCAGA
  GAGCAGGCAG GAGCTGTGGT CCTGTCATGT TTGTCTCTGG CTCTGTGGTT GCAGGGCTCT
  GAGGAGGGCC CAGCTGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770509	NES09146792	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545390					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770509	NES09146792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137647768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ece1	endothelin converting enzyme 1			Intron
				Noncoding-Transcript-Variant
Rr602779	regulatory region 602779			within coordinates
Rr602780	regulatory region 602780			1132 bp proximal
Tssr39794	transcription start site region 39794			287 bp upstream
Tssr39795	transcription start site region 39795			308 bp upstream
Tssr39796	transcription start site region 39796			325 bp upstream
Tssr39797	transcription start site region 39797			415 bp upstream
Tssr39798	transcription start site region 39798			431 bp upstream