TGGGGGTGCT GCAAGACAGA GTTAGGTATC CCTAGGTCCC CTGGTGTGCT CGGGACCTCA CAAGGACTCC TTTCGTTCCT CTTCATGCTC TTTCTCCCTC ATCCACTCCA AAGGGCAGTG ACGTCACTTC CAGTTCTTCG GATGAATTTC CTGTTCTTTC TCAGAGCTAT GCCTGGCACC CATCCCCTTT TTTATTTGTC K ACACCCAACC CAGACATCAC CTGCTCCAGG GAGCCTCTCC TGTCCACCCA TCTGTTCATT ATCTGCCTTC CCTCCTGGCT CTAAGCAGTT GAAAGCAAAG GAATCCATTT TCTCCCACTC GAGTTGGTAC CCAGATGTTT GTACGGGGTG ACGTCACTGC ACAGCCCCAC CTTCTGGAGA CTCTTCCTGT CCTGTGCCCT K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37770511 | NES09146789 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | G | T | T | T | G | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27545392 | SNP | T | T | T | T | T | T | G | T | T | T | G | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37770511 | NES09146789 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr4:137647227 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ece1 | endothelin converting enzyme 1 | within coordinates | ||||||
Rr602778 | regulatory region 602778 | 1807 bp distal | ||||||
Rr602779 | regulatory region 602779 | within coordinates | ||||||
Rr602780 | regulatory region 602780 | 1673 bp proximal | ||||||
Tssr39794 | transcription start site region 39794 | 828 bp upstream | ||||||
Tssr39795 | transcription start site region 39795 | 849 bp upstream | ||||||
Tssr39796 | transcription start site region 39796 | 866 bp upstream | ||||||
Tssr39797 | transcription start site region 39797 | 956 bp upstream | ||||||
Tssr39798 | transcription start site region 39798 | 972 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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