rs27545393 SNP Detail

Summary

• ID
  rs27545393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137647202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT CTTTCTCAGA GCTATGCCTG
  S
  CACCCATCCC CTTTTTTATT TGTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770512	NES09146788	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C		C	C	C		G	C	C		C
ss45632302	mCV24782636	ABI	CRAMUS_MOUSE	f	SNP		C					G	C
ss147625658	ENSMUSSNP4849416	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321368931	CHEV_4_137475806	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545393					SNP	G	C	C	C	G	C	G	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770512	NES09146788	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137647202 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602778	regulatory region 602778	1782 bp distal
Rr602779	regulatory region 602779	within coordinates
Rr602780	regulatory region 602780	1698 bp proximal
Tssr39794	transcription start site region 39794	853 bp upstream
Tssr39795	transcription start site region 39795	874 bp upstream
Tssr39796	transcription start site region 39796	891 bp upstream
Tssr39797	transcription start site region 39797	981 bp upstream
Tssr39798	transcription start site region 39798	997 bp upstream