rs27545394 SNP Detail

Summary

• ID
  rs27545394
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137647152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA CTCCAAAGGG CAGTGACGTC
  W
  CTTCCAGTTC TTCGGATGAA TTTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770513	NES09146787	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T		T	T	T	T		T	A	T	T		T
ss45657151	mCV24782637	ABI	CRAMUS_MOUSE	f	SNP		T					A		T
ss147625653	ENSMUSSNP5864204	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321368930	CHEV_4_137475756	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545394					SNP	A	T	T	T	A	T	A	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770513	NES09146787	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137647152 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602778	regulatory region 602778	1732 bp distal
Rr602779	regulatory region 602779	within coordinates
Rr602780	regulatory region 602780	1748 bp proximal
Tssr39794	transcription start site region 39794	903 bp upstream
Tssr39795	transcription start site region 39795	924 bp upstream
Tssr39796	transcription start site region 39796	941 bp upstream
Tssr39797	transcription start site region 39797	1031 bp upstream
Tssr39798	transcription start site region 39798	1047 bp upstream