rs27545397 SNP Detail

Summary

• ID
  rs27545397
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137646820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TAGGGTGCAC GCCTCCTGGT
  S
  ACAGTCGCAG AATGTCCCCC GTTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37770516	NES09146784	PERLEGEN	MM_PANEL2	f	SNP	G		G	C		C	C		C	G	C
ss147625631	ENSMUSSNP1431597	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss321368926	CHEV_4_137475424	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27545397					SNP	G	C	G	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770516	NES09146784	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137646820 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602778	regulatory region 602778	1400 bp distal
Rr602779	regulatory region 602779	250 bp proximal
Tssr39794	transcription start site region 39794	1235 bp upstream
Tssr39795	transcription start site region 39795	1256 bp upstream
Tssr39796	transcription start site region 39796	1273 bp upstream
Tssr39797	transcription start site region 39797	1363 bp upstream
Tssr39798	transcription start site region 39798	1379 bp upstream