rs27545398 SNP Detail

Summary

• ID
  rs27545398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137646756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGAGG CCACAAGGTG
  GAAAAGAAAG GCTGGGACAA GTCCTGGAGC AGAAGGATAG CCACATGAAG GGACACTGAT
  GTCAGTGCCC TGCCAAGGCT GCACCTGGCT GGAGGCCTTC AGGCCCCTCT TTATGCCAAC
  ACTGGAGGTA GACGTAAGTG TGTCTATGGG AGCACGTGTC CCAGGCTGTC TCTGAACAGC
  Y
  GAGACGGTTA GAAACCTTTA CCTCTCACAC TTGGCAACCA CCATAGGGTG CACGCCTCCT
  GGTGACAGTC GCAGAATGTC CCCCGTTCTC AGCATCCTTT TCTCGGTTTT AGATCCCAAT
  TTTCCTTCTC GTGTTCCGCT TTCCTTTTTT TAGTACCCAG GAGGTACCCC AGGATGGCCC
  TTCCCTAGAG TAACCCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770517	NES09146783	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27545398					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770517	NES09146783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137646756 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602778	regulatory region 602778	1336 bp distal
Rr602779	regulatory region 602779	314 bp proximal
Tssr39794	transcription start site region 39794	1299 bp upstream
Tssr39795	transcription start site region 39795	1320 bp upstream
Tssr39796	transcription start site region 39796	1337 bp upstream
Tssr39797	transcription start site region 39797	1427 bp upstream
Tssr39798	transcription start site region 39798	1443 bp upstream