rs27545400 SNP Detail

Summary

• ID
  rs27545400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137646349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT CCTTTTATCT GCCGCCTCTT
  Y
  CTTCTCCTTC ACCTCCTTGA TGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770519	NES09146781	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C		C	T	C	C		C
ss147625626	ENSMUSSNP414615	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321368924	CHEV_4_137474953	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27545400					SNP	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770519	NES09146781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137646349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ece1	endothelin converting enzyme 1			Intron
				Noncoding-Transcript-Variant
Rr602778	regulatory region 602778			929 bp distal
Rr602779	regulatory region 602779			721 bp proximal
Tssr39794	transcription start site region 39794			1706 bp upstream
Tssr39795	transcription start site region 39795			1727 bp upstream
Tssr39796	transcription start site region 39796			1744 bp upstream
Tssr39797	transcription start site region 39797			1834 bp upstream
Tssr39798	transcription start site region 39798			1850 bp upstream