rs27549369 SNP Detail

Summary

• ID
  rs27549369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126652236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTAG CTCAGAAGAC
  AGCTTTGTGA AACCAATTCT CTCCTTCCAC CTTCGTGTGG ATTCTGAGGA TTAGACTCAG
  GTGGTCAGGC TTGCTCAGCT GAGACATCTC ACTGGCTCCA AACACTTCGT TGTTGTTTTT
  AATAGAAGAG AGCCACGTTG ATGGACTTGT CAGAGTCAAC TGTCCTTCTG AAGACCATTT
  Y
  ACCTGCTTAG AGCCTCTTGC CAGGCATCAG TGCCAAGAAG GCTAAATGCC AAAAGCCAAA
  TTTAAAAATA CGCTCGGACC CTGTCTTTAC ATTTATCATT CTTTTGCTGA CATAATATGG
  AGTGTGAGGA AGCAGCCTTT AAGGACTTCT GAGTGTGCCC TTATTCTGGA CAAAGACCAA
  AAGCCTGCTG CAGAGACGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37730896	NES09174908	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27549369					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37730896	NES09174908	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126652236 () rs orientation: forward

Symbol	Name	Function Class
AU040320	expressed sequence AU040320	within coordinates
Tssr39020	transcription start site region 39020	1863 bp downstream
Tssr39021	transcription start site region 39021	1439 bp downstream
Tssr39022	transcription start site region 39022	1430 bp downstream