rs27549370 SNP Detail

Summary

• ID
  rs27549370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:126652191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTATAA TTTGAAAGGG
  CTGCACATGC CTGCAACGAT GGTCTGTGTG TGTAGCTCAG AAGACAGCTT TGTGAAACCA
  ATTCTCTCCT TCCACCTTCG TGTGGATTCT GAGGATTAGA CTCAGGTGGT CAGGCTTGCT
  CAGCTGAGAC ATCTCACTGG CTCCAAACAC TTCGTTGTTG TTTTTAATAG AAGAGAGCCA
  Y
  GTTGATGGAC TTGTCAGAGT CAACTGTCCT TCTGAAGACC ATTTTACCTG CTTAGAGCCT
  CTTGCCAGGC ATCAGTGCCA AGAAGGCTAA ATGCCAAAAG CCAAATTTAA AAATACGCTC
  GGACCCTGTC TTTACATTTA TCATTCTTTT GCTGACATAA TATGGAGTGT GAGGAAGCAG
  CCTTTAAGGA CTTCTGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37730897	NES09174907	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27549370					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37730897	NES09174907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126652191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AU040320	expressed sequence AU040320			Intron
				Noncoding-Transcript-Variant
Tssr39020	transcription start site region 39020			1818 bp downstream
Tssr39021	transcription start site region 39021			1394 bp downstream
Tssr39022	transcription start site region 39022			1385 bp downstream