rs27549376 SNP Detail

Summary

• ID
  rs27549376
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126649945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATTATATT CTCTAGGCTG ACCTTGAAGT CCTGGATTTA
  AACAGTTCTA CCTTAGCCTT CCAAGTAGCT AGGACTTCAG GTACGAGATA CCATGCCTAG
  W
  CAACAGATTT TTGAATTGTT TCTTAGAACC CTGTCAACAA CTCATCTTGA TATATATATA
  TATCGTTCCT CTTTCTTCTC CCCTCCATCC TACAGCCACT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37730903	NES09174992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27549376					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37730903	NES09174992	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126649945 () rs orientation: forward

Symbol	Name	Function Class
AU040320	expressed sequence AU040320	within coordinates
Cpgi14831	CpG island 14831	1836 bp distal
Rr599755	regulatory region 599755	1495 bp distal
Rr599757	regulatory region 599757	691 bp distal
Tssr39020	transcription start site region 39020	396 bp upstream
Tssr39021	transcription start site region 39021	831 bp upstream
Tssr39022	transcription start site region 39022	854 bp upstream