rs27549378 SNP Detail

Summary

• ID
  rs27549378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126649143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGTTT TGTCGTTCCT
  GCCTCTGGTC AGCAAGCCTT TAACTGGACC CTAGCAGTGA TTTGTGCCCA TAGGCAATTG
  TAGGTTTGAG CCGAGTAAAT GGCTAGGAGT GCAAATGAGA TTAGCTCTGC CTCTCCCATG
  CACTTGTAAC CAGTTTGCTA GTCCAATGGT ATTTATTACT CCTGTTTTCA AAGCCTTCTC
  S
  TTTCTTTTTT GCTTTTCCCA CCCACGTGCC AAGATATTGA TGACAGGTGT TGAGTCACCT
  TTAGTTTTAA ATCCTTTTGT GGTAGGCAGA AACGAGAACA CACTCACGAA CACACACACA
  TACACTCTCT CAGCTCCATC CTGGGAGGCT AGCGAAGTTT CCGAGTATAG CTTCTTAGGC
  TACACCTCAT GATCTTTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37730905	NES09175053	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27549378					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37730905	NES09175053	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126649143 () rs orientation: forward

Symbol	Name	Function Class
AU040320	expressed sequence AU040320	within coordinates
Cpgi14831	CpG island 14831	1034 bp distal
Ncdn	neurochondrin	1940 bp upstream
Rr398495	regulatory region 398495	1741 bp downstream
Rr599754	regulatory region 599754	1570 bp distal
Rr599755	regulatory region 599755	693 bp distal
Rr599756	regulatory region 599756	1395 bp distal
Rr599757	regulatory region 599757	within coordinates
Tssr39018	transcription start site region 39018	1515 bp downstream
Tssr39019	transcription start site region 39019	1470 bp downstream
Tssr39020	transcription start site region 39020	1198 bp upstream
Tssr39021	transcription start site region 39021	1633 bp upstream
Tssr39022	transcription start site region 39022	1656 bp upstream
Tssr43399	transcription start site region 43399	1989 bp upstream
Tssr43400	transcription start site region 43400	1910 bp upstream
Tssr43401	transcription start site region 43401	1706 bp upstream
Tssr43402	transcription start site region 43402	1670 bp upstream
Tssr43403	transcription start site region 43403	1621 bp upstream
Tssr43404	transcription start site region 43404	1568 bp upstream