rs27550264 SNP Detail

Summary

• ID
  rs27550264
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125953614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAATGCAA ATATGTCTAG TGGGGCTTTA TAAAATGCAA
  ATATGTCTAG TATGTCTCTC CTCAAAATTG CCGACAACCT TCCACTCCTG TCTAAATGGA
  K
  ACCAAGTCCT AGGCAGAACA CGTTGGGGCC CTCCGATTAG GACACTGTCT TAGTCAGGGT
  TTCTATTCCT GCACAAACAT CATGACCAAG AAGCAAGTTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732896	NES09192475	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27550264					SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732896	NES09192475	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125953614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	909 bp distal
Gm68683	predicted gene, 68683	1323 bp upstream
Oscp1	organic solute carrier partner 1	within coordinates
Rr99993	regulatory region 99993	213 bp distal
Rr398485	regulatory region 398485	1128 bp downstream
Tssr1297	transcription start site region 1297	1186 bp downstream
Tssr38971	transcription start site region 38971	1867 bp downstream
Tssr38972	transcription start site region 38972	1208 bp downstream
Tssr38973	transcription start site region 38973	1197 bp downstream
Tssr38974	transcription start site region 38974	1161 bp downstream
Tssr43347	transcription start site region 43347	1385 bp upstream