rs27550266 SNP Detail

Summary

• ID
  rs27550266
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125952445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT CACAAACCCT GGGGTTCTTC
  M
  TTCATCTACC CTGCGGGTTT CCGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37732898	NES09192471	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A		A	A	C		A	A	A		A
ss45592171	mCV22610805	ABI	CRAMUS_MOUSE	f	SNP		A	C				C		A
ss147405241	ENSMUSSNP1308605	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss321299934	CHEV_4_125735896	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27550266					SNP	A	A	C	A	A	A	C	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732898	NES09192471	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125952445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	within coordinates
Gm68683	predicted gene, 68683	154 bp upstream
Oscp1	organic solute carrier partner 1	within coordinates
Rr85182	regulatory region 85182	1245 bp distal
Rr99993	regulatory region 99993	within coordinates
Rr398485	regulatory region 398485	within coordinates
Tssr1297	transcription start site region 1297	17 bp downstream
Tssr38971	transcription start site region 38971	698 bp downstream
Tssr38972	transcription start site region 38972	39 bp downstream
Tssr38973	transcription start site region 38973	28 bp downstream
Tssr38974	transcription start site region 38974	within coordinates
Tssr43347	transcription start site region 43347	216 bp upstream