rs27550268 SNP Detail

Summary

• ID
  rs27550268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125952171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACTCAG AATGCCTTCG
  TGGCGCTTGC CATGACCTCA CTGGTTCCTC TGCACGTCCC TGGGAGATAG TTCACAAATC
  TGCCCGCAGC ACAGCAGGCC ATGGCGGACC GGGACGCTAG ACGACTCTAG GCGAACGACT
  CCGAAGACGC TGGGGTTGAT TTTCCTAGTT TCCGGTGCGA TGGCTGGGCC ACGGCAGATA
  S
  GCGCGGCTGG CTGGAACGCT CCCGGCGACA CCAAAGCTAA ACTGGAAAAC TCAAAACCAG
  CGCTCCCGGG AGGCCAAAGG TGCGCGCCTC CGTTTGAACC AATCCCCTGA AGCGATCTTT
  GTCACTTAAC CCAATAAGCG CCGGTCTTCG GCCACCTCCT ATCAATCCAC CATGTGATTG
  GTTCGCCTTT CTGTTCCCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37732900	NES09192469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27550268					SNP	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732900	NES09192469	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125952171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	within coordinates
Gm68683	predicted gene, 68683	within coordinates
Oscp1	organic solute carrier partner 1	187 bp upstream
Rr398485	regulatory region 398485	14 bp upstream
Tssr1297	transcription start site region 1297	252 bp upstream
Tssr38971	transcription start site region 38971	424 bp downstream
Tssr38972	transcription start site region 38972	179 bp upstream
Tssr38973	transcription start site region 38973	237 bp upstream
Tssr38974	transcription start site region 38974	273 bp upstream
Tssr43347	transcription start site region 43347	30 bp downstream