rs27550273 SNP Detail

Summary

• ID
  rs27550273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125951800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAATTT AGTCCAACAG
  CATCAGAGCA GTGACACAGA GGAACGTAGG AATGCAGAAA GGGGAATTAA GGAATGCGAG
  GATTCTACAA GGAAAAGGAG GAAGTGGCTG ATTATTAAAG GAGGTGGATG TAGGTTCCAA
  AGCTCAAGTC TCAAGATTGC TGTGGCTGGA GAGAGAAGTG CTTAGCAGAA ACACTGATGA
  Y
  GAATCGTCTG AAAAGGTCCA GCCGTAGGTG AAGAAACGCG AGGGTGCTAC TTAAGTTGCT
  AGGAGGGCCG GGCTGGGTTG CCTCACTGAG TAGTAAATCC GGCGTAACAT CGCTTCCAGG
  AGGGGTTAGA AAGGAGACAA ATGATATAAC TAATCGAGAT GAGGGATTAT AATAACTCAG
  AATGCCTTCG TGGCGCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37732905	NES09192464	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27550273					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732905	NES09192464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125951800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	42 bp proximal
Gm68683	predicted gene, 68683	within coordinates
Oscp1	organic solute carrier partner 1	558 bp upstream
Rr85182	regulatory region 85182	600 bp distal
Rr99993	regulatory region 99993	within coordinates
Rr398485	regulatory region 398485	385 bp upstream
Tssr1297	transcription start site region 1297	623 bp upstream
Tssr38971	transcription start site region 38971	53 bp downstream
Tssr38972	transcription start site region 38972	550 bp upstream
Tssr38973	transcription start site region 38973	608 bp upstream
Tssr38974	transcription start site region 38974	644 bp upstream
Tssr43347	transcription start site region 43347	401 bp downstream