rs27550277 SNP Detail

Summary

• ID
  rs27550277
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125951199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC AGTCTGACAG TACACAGAGG
  S
  AAACTCTGAA AGGGACCGTG TTCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37732909	NES09192498	PERLEGEN	MM_PANEL2	f	SNP	G		C	G		G	C		G	G	G		G
ss45596212	mCV22610807	ABI	CRAMUS_MOUSE	f	SNP		G	C		C	G
ss147405225	ENSMUSSNP6258759	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C			G
ss321299931	CHEV_4_125734650	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27550277					SNP	G	G	C	G	C	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732909	NES09192498	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125951199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	643 bp proximal
Gm68683	predicted gene, 68683	84 bp downstream
Mrps15	mitochondrial ribosomal protein S15	1874 bp downstream
Oscp1	organic solute carrier partner 1	1159 bp upstream
Rr398485	regulatory region 398485	986 bp upstream
Tssr1297	transcription start site region 1297	1224 bp upstream
Tssr38971	transcription start site region 38971	544 bp upstream
Tssr38972	transcription start site region 38972	1151 bp upstream
Tssr38973	transcription start site region 38973	1209 bp upstream
Tssr38974	transcription start site region 38974	1245 bp upstream
Tssr43347	transcription start site region 43347	1002 bp downstream