rs27550278 SNP Detail

Summary

• ID
  rs27550278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125950785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATTCCT CAAGCCGGCT
  GCCTTTCTAT TTTTTTGTAG GGGAGGAGGG GAAGGTAAGG GGGTTCCAGA CTGTCCTGGA
  ACTCTGTAGA CCAGACTGGC CTTGAGTTTA AAAATCCACC TGCCTCTGCC TTCCAAGTGC
  TGAGATTAAA GGTTTTTGCG GCCACTGTCC TATTTTCTAT TGAAAACAGG CTTACGAAAC
  R
  TAGACAACTT GTCCAATTTT GAAAGCTGAC TAGTGTTCAA ACCTAGCTCT CTCTGGTTTT
  GGATTTTTGT TTTTAAAGAT TTATTCATTT ATTATATGTA AGTACACTGT AGCTGTCTTC
  AGACACTCCA GAAGAGGGCG CCAGATCTCG TTACGGATGG GTGTGAGCTA CCATGTGGTT
  GCTGGGAATT GAACTCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37732910	NES09192508	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27550278					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732910	NES09192508	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125950785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	1057 bp proximal
Gm68683	predicted gene, 68683	498 bp downstream
Mrps15	mitochondrial ribosomal protein S15	1460 bp downstream
Oscp1	organic solute carrier partner 1	1573 bp upstream
Rr85182	regulatory region 85182	16 bp proximal
Rr99993	regulatory region 99993	215 bp proximal
Rr398485	regulatory region 398485	1400 bp upstream
Tssr1297	transcription start site region 1297	1638 bp upstream
Tssr38971	transcription start site region 38971	958 bp upstream
Tssr38972	transcription start site region 38972	1565 bp upstream
Tssr38973	transcription start site region 38973	1623 bp upstream
Tssr38974	transcription start site region 38974	1659 bp upstream
Tssr43347	transcription start site region 43347	1416 bp downstream