rs27555312 SNP Detail

Summary

• ID
  rs27555312
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131711117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGACTGA GAAGCAAGCT
  ATCCAAAGCA TCTCTGGCAA TTTTCACAAT TATGTGTATC TCTCTACATA AGTGATATGC
  TCTTCTACTT CATTTTCAGT TATTTTATGT TTTCGTTGTT TCTACTCTTA GGTGTCGATA
  AACAGGTCCA GGTCACCAGC AGGATAGAAG TCAGTTCAGA GGCAGCAGGT TCAAGTCACA
  V
  TCTGTGGACC AGAACCCTGA TTCCTGCCTC TAGAGTCACG TCTATGTCTC CTTTAGTCTC
  CCCTATGAGG TAAGAATCAG AATAATATCT ATTTGTACAT CATATGGATA ACAATGAGGG
  CTTTGTTTTT GTTTTGTGAA TGCATAACAC GTGACTATCA AGATCAAATG AGATTAAGGT
  TGTAAAACTG CTTTGTAAAC                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747838	NES09175328	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C		G	C	C	C		C
ss321329627	CHEV_4_131539721	CHEVERUD	SCREENING_POP	f	SNP									C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555312					SNP	C	C	C	C	C	G	C	C	C	G	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747838	NES09175328	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131711117 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	1840 bp distal
Rr600834	regulatory region 600834	1687 bp distal
Rr600835	regulatory region 600835	238 bp distal
Tssr43622	transcription start site region 43622	1076 bp upstream