rs27555318 SNP Detail

Summary

• ID
  rs27555318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131710587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTTTTGT GATTAAGATG TCTTCACTGC
  CAGGCAGATA ATGAGGTAAA CTTGTTTGAA AACAGCCAGT CTCACTGTCT AAACATCCAC
  TGTGCCAGTC TCTCTAAGTT TCTTCTCTTT CGAAGTATGT CCTTGAGCTG TTCTGTTAGC
  Y
  ATGAAGACAA AGACATCACT CATAATGCTG CACGATTTGG ACCAATTACG ACAGTTCACA
  GTAACAAGGC AGCAGGCCCC CAAGGAAAAA CACAGGGACA AGGAACTTTC CCCTAAGACA
  GCCTGGAGTC ATTGGAGCAG CAGGGGTCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747844	NES09175322	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T	T		T
ss321329620	CHEV_4_131539191	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555318					SNP	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747844	NES09175322	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131710587 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	1310 bp distal
Rr600834	regulatory region 600834	1157 bp distal
Rr600835	regulatory region 600835	within coordinates
Tssr43622	transcription start site region 43622	546 bp upstream