rs27555320 SNP Detail

Summary

• ID
  rs27555320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131710485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAAATT AAACTGGAGG
  GCAGCTGATG GTACTTAGCT GGGACTCTTA TTGGGGGCAG ATTTGATGAA AAGCAACTTT
  CTGGTAACAG ATGGGGTCCT GCCCACTGAT CTCAACAGAT AAATTGGCTA ATAGAAGCAC
  ACTGATAACA GGACTGTTTT GTGATTAAGA TGTCTTCACT GCCAGGCAGA TAATGAGGTA
  R
  ACTTGTTTGA AAACAGCCAG TCTCACTGTC TAAACATCCA CTGTGCCAGT CTCTCTAAGT
  TTCTTCTCTT TCGAAGTATG TCCTTGAGCT GTTCTGTTAG CTATGAAGAC AAAGACATCA
  CTCATAATGC TGCACGATTT GGACCAATTA CGACAGTTCA CAGTAACAAG GCAGCAGGCC
  CCCAAGGAAA AACACAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747846	NES09175320	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		G	A	A	G		G	A	A	A		G
ss45587361	mCV22901404	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		A
ss147472341	ENSMUSSNP2335011	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321329618	CHEV_4_131539089	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555320					SNP	G	G	A	A	A	A	A	G	A	A	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747846	NES09175320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131710485 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	1208 bp distal
Rr600834	regulatory region 600834	1055 bp distal
Rr600835	regulatory region 600835	within coordinates
Tssr43622	transcription start site region 43622	444 bp upstream