rs27555322 SNP Detail

Summary

• ID
  rs27555322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131710091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAATTTA TGGTAATAAC
  AACAGAATAT TCATTATCCT TTATATAAAA ACACACATAC ACACATTTTT GAATCCTCAA
  CATAATTACG GGATGAGAAT CTTCCTACTA TCTGAGCCTA AATAACTGAA ATATGACTTA
  GAAAACAGTT AAAAAAAAAA AAAAGGCAAG AAGACATCAA AAAGCTCTCA GAAAAGCAAA
  Y
  TCTTAATCCG ACGGTTTCCT TCAAGCTCCC ACACCCAGCA AGAATTCTGC ACGCCTCTTT
  AGCCTTTTTC TATGTCACAC ATGAGCCCCT CCTACTAATT TTCCTGCCAA AGTAATGACC
  AAATGAAATC CTCAGCACAA TTTACAAGAT CCTCTTAGCT GCCTTTTCTT CTCTATACCC
  TGAATTGAGT TATTATGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747848	NES09175318	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T		T	C	C	C		C
ss321329615	CHEV_4_131538695	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555322					SNP	C	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747848	NES09175318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131710091 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	814 bp distal
Rr600834	regulatory region 600834	661 bp distal
Rr600835	regulatory region 600835	within coordinates
Tssr43622	transcription start site region 43622	50 bp upstream