rs27555326 SNP Detail

Summary

• ID
  rs27555326
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131708762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCTAT AAACCTGGGC
  AGAGCTCTGC AGTCTGCATA TTTAATAAAT ACCTAGGCAA TTCTTAGGTG ATGCTCCCTG
  TGAAACGGAA ACGCACCTTT CTGCCTCTCT GTATTTTCAA ATATAACTTT ATTTTAGAAA
  ATACAATCTA TTTTTCTTTA GATGTTCACA TTTTTATCTT TACAATGTTT TGGTTGAAAA
  W
  TTTTGATCGT GAAAGTGGTA AGGGATATCT GGACTGATAC CTAGAATTCT TAAAAACAAC
  AACAACAAAA AACTATATCA ATTCAAGTTG GGCATGATGG CACAGGCCTG TAAACCTAGT
  ACCTGGGAGG CGGATGATAG CAAGTTATAG GTAGGACAGG GCTACATAGT AAGGCTCTGT
  CTGAAAACAT AAACAAACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747852	NES09175378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T		T	A	A	A		A
ss321329600	CHEV_4_131537366	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555326					SNP	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747852	NES09175378	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131708762 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	494 bp proximal
Rr600834	regulatory region 600834	647 bp proximal
Rr600835	regulatory region 600835	1313 bp proximal
Tssr43622	transcription start site region 43622	1275 bp downstream