rs27555327 SNP Detail

Summary

• ID
  rs27555327
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131708655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAGACC ACACTTAGAA
  TCCCTGGCCT TGGGGAATGG CTCTGATTCA GACATCATTA GCCTCATTTG GAATGGTCAT
  TATAGCTGAA GCTAGAGCCT CTTCAAGGCC AGCCTATAAA CCTGGGCAGA GCTCTGCAGT
  CTGCATATTT AATAAATACC TAGGCAATTC TTAGGTGATG CTCCCTGTGA AACGGAAACG
  S
  ACCTTTCTGC CTCTCTGTAT TTTCAAATAT AACTTTATTT TAGAAAATAC AATCTATTTT
  TCTTTAGATG TTCACATTTT TATCTTTACA ATGTTTTGGT TGAAAAATTT TGATCGTGAA
  AGTGGTAAGG GATATCTGGA CTGATACCTA GAATTCTTAA AAACAACAAC AACAAAAAAC
  TATATCAATT CAAGTTGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747853	NES09175376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G		G	C	C	C		C
ss321329599	CHEV_4_131537259	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555327					SNP	C	C	C	C	C	G	C	C	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747853	NES09175376	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131708655 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	601 bp proximal
Rr600834	regulatory region 600834	754 bp proximal
Rr600835	regulatory region 600835	1420 bp proximal
Tssr43622	transcription start site region 43622	1382 bp downstream