rs27555328 SNP Detail

Summary

• ID
  rs27555328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131708184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGACTG AACCTAGGAC
  TTCATGCATG CTAGGCAAGC GCTCCACCCT CTGAGCTCCA TCTCTAGTCC CATTTCCCTT
  TTGTGGCTAA GTATCTCTAC TCTTTTATTT CTTACTGGAT GTGGCTCTGT CTACATCACA
  GACACTAGTT AAGTACCTTT AAATGAGCCT GGGACCATCC CTTGAATCCT TTCTCTGCAA
  Y
  CTTTCCAACT CTCCTAGCCA TTTTAGTGGC CATTTAGTAG CCAAGCAACT TGCATTAAGT
  AGGCAGGTCT GTGATTTTAA AGCTCAGGCC TCTGATTTCC TAACCCAGTA AGTAATTCTC
  AAAAGAGCTA TAGTTTATCC AGTGTGCATG AGTCACTCGA AGAGCTTGTC AGGCACACTT
  CTGAGTTCCC ACCCACTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747854	NES09175415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T		T	C	C	C		C
ss321329591	CHEV_4_131536788	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555328					SNP	C	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747854	NES09175415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131708184 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	1072 bp proximal
Rr600834	regulatory region 600834	1225 bp proximal
Rr600835	regulatory region 600835	1891 bp proximal
Tssr43622	transcription start site region 43622	1853 bp downstream