rs27555329 SNP Detail

Summary

• ID
  rs27555329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131708177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATGTGCT GGGACTGAAC
  CTAGGACTTC ATGCATGCTA GGCAAGCGCT CCACCCTCTG AGCTCCATCT CTAGTCCCAT
  TTCCCTTTTG TGGCTAAGTA TCTCTACTCT TTTATTTCTT ACTGGATGTG GCTCTGTCTA
  CATCACAGAC ACTAGTTAAG TACCTTTAAA TGAGCCTGGG ACCATCCCTT GAATCCTTTC
  Y
  CTGCAACCTT TCCAACTCTC CTAGCCATTT TAGTGGCCAT TTAGTAGCCA AGCAACTTGC
  ATTAAGTAGG CAGGTCTGTG ATTTTAAAGC TCAGGCCTCT GATTTCCTAA CCCAGTAAGT
  AATTCTCAAA AGAGCTATAG TTTATCCAGT GTGCATGAGT CACTCGAAGA GCTTGTCAGG
  CACACTTCTG AGTTCCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747855	NES09175414	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	T	T	T		C
ss321329590	CHEV_4_131536781	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555329					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747855	NES09175414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131708177 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	1079 bp proximal
Rr600834	regulatory region 600834	1232 bp proximal
Rr600835	regulatory region 600835	1898 bp proximal
Tssr43622	transcription start site region 43622	1860 bp downstream