rs27555529 SNP Detail

Summary

• ID
  rs27555529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124505005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTCTA AAGAGCAAGT
  TCCAGAACAG CCAGGGCTAC ATAGAGAGGT CATGTCTCAA ATCAACAAGA AAAAGATCTG
  GCAGTTTCAT CTGGTAAAGT TCTTGCTGTT AGGAACTCTG CAGAGTCCCC AGGTAGCTCA
  GAGCAGTGCT GACATGAGGG CCTGAGTACC CTGCAATCTC TCTCCCTCTT CCTATGAGGC
  R
  TCAATCCCAT AGGTTCAGGG ACCAGCTCTA AGGCCTTATT AAACCTTCAT TGCCCCCATT
  CCAATTGCCA GTCAAATTTA GCTTCTGTCT CTTTAAGAGT CACAGTGAGA GATACATTTT
  AAAATGAGGC CAGGTATGTT AACACTCCCG TATAGTCCCA ACATTTGAGA GGCTGAAACA
  GGAAGATAGA GCATCCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37739753	NES09188144	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27555529					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739753	NES09188144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124505005 () rs orientation: forward

Symbol	Name	Function Class
3100002H09Rik	RIKEN cDNA 3100002H09 gene	409 bp upstream
Gm2164	predicted gene 2164	within coordinates