rs27555531 SNP Detail

Summary

• ID
  rs27555531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124504573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATTCACG AACCAACCAA CTGCATCTCC TACCCTCATA
  GAGTTCCCAT TCTGGCCTCC ATCTGGGGGA GAAGCCATAA ATAGGGTAGA GCCATGAGTC
  Y
  ACCCATAAGT ACTCATGGTG TCCAGATGTG GCCCAGGCAC AGAGACCTTA AGACAGCAGA
  AAGAAGGAAG CCGAATGGCT TCCTCTTGCT GACTTGACAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37739755	NES09188194	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27555531					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739755	NES09188194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124504573 () rs orientation: forward

Symbol	Name	Function Class
3100002H09Rik	RIKEN cDNA 3100002H09 gene	within coordinates
Gm2164	predicted gene 2164	within coordinates