rs27555534 SNP Detail

Summary

• ID
  rs27555534
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124502676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TGACACCAAC TTAACATCTG
  M
  TCAAAGCTTG GCTCTTTGTT TTCGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37739758	NES09188257	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	C	A		C	A	C	C		C	C	C	C		A
ss45601058	mCV22615923	ABI	CRAMUS_MOUSE	f	SNP		C	C					A		A
ss147388895	ENSMUSSNP1416361	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
ss321294263	CHEV_4_124286126	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27555534					SNP	C	C	C	C	A	C	A	A	C	A	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739758	NES09188257	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124502676 () rs orientation: forward

Symbol	Name	Function Class
3100002H09Rik	RIKEN cDNA 3100002H09 gene	1048 bp downstream
Gm2164	predicted gene 2164	within coordinates
Gm70190	predicted gene, 70190	1814 bp downstream
Rr599299	regulatory region 599299	1152 bp distal