rs27556760 SNP Detail

Summary

• ID
  rs27556760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132238063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCTGTT TCTCGGGGAG
  GCGGAGCCGA CACCTCCCTC CGGAGCCAAC CTTCCGTCCA ATCAGCATCG ACAAGCGCCT
  GGGAACTCTG GGAGCTGTAG TTGGCCTCGC ACAGATGCTG CAAACTTTTG CATGAAGGCG
  TTAGTCAGGT CTCTGGCAAT ACCAGATGAG AGTGACAGCC CAAGGAGTCA TTAGGGCTGC
  R
  TGATGAAACG GGACTTCACG GGGCTGGGCC AGACAGCCAG GTGTGAAATC CCTTCTGAGT
  AAGTTCTTCA GCTTTCCAGT TCCTGGAGGG ACTGGTTAGG TCTGCAGAGA GTTCTAACCA
  CACACATCCA GTTCTTCTAA TTATAGATCA AAACCCACAA ATTTGAAGCC AAGAGCCACC
  ACCCTGTCCC CTCAGGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758843	NES09152650	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27556760					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758843	NES09152650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132238063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	1103 bp upstream
Rr377206	regulatory region 377206	within coordinates
Rr600990	regulatory region 600990	1114 bp distal
Rr600991	regulatory region 600991	613 bp distal
Rr600992	regulatory region 600992	within coordinates
Rr600993	regulatory region 600993	1378 bp proximal
Sesn2	sestrin 2	296 bp upstream
Tssr43678	transcription start site region 43678	275 bp upstream
Tssr43679	transcription start site region 43679	261 bp upstream
Tssr43680	transcription start site region 43680	243 bp upstream