rs27556761 SNP Detail

Summary

• ID
  rs27556761
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132236859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCTCCC TGTGAAGTCT
  CTCTACGCTC TGAGGAGACA GCAAAACAAA CTTTGAGGAC CCCAGAACAA TTTAATAGGA
  AGCAATCTAT CAAGGGACCA AGGGTTATCC GCTTTCTCCC CTAGCTCTCT CAGGCTGCCG
  CCGCCGAGGA TCAGGCCGCC AGCCAGACCC ATAAAGCACT CGGACCAGTC TCCAGATCGG
  R
  GGTGCAGGTA AGGACTGAAA AAGGGAATCG ACCTTCCCTG GTCAGTCCCA GGTGGTTTAC
  TCCCTTCGCT GAGCGACAGG ACCAGAAACC GATCCTAGAA AGAGCTCCCA GCCCGCCTGC
  CCCCACCGAG AGGAAGGGAT TCTGCGGAAG GGGGCGGGGA GGAGGAGTGG TCGGGTCTCT
  CCGGCCGGGA TTTGCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758852	NES09152640	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27556761					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758852	NES09152640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132236859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	within coordinates
Rr377205	regulatory region 377205	1545 bp downstream
Rr377206	regulatory region 377206	within coordinates
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	908 bp downstream
Tssr43679	transcription start site region 43679	936 bp downstream
Tssr43680	transcription start site region 43680	945 bp downstream