rs27556762 SNP Detail

Summary

• ID
  rs27556762
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132236403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATACA GATTCCTAAA
  CCATATGAAG AAGCAACAGA CTGATGGCTG CCTCCAACGA CCCCCCCCCC CCAAGACATT
  TCCTCAGACA TGGGCTGGTT TTAAGATCAT ACACCTTGGG ACTACCACTG TACCTATTTC
  CAGCCCCGGC AATAGACCTT CCACACTGCT CTAGGCTTAG AAAATCAAAA AGGATCAGTA
  K
  CTTCTGCAGT GCCAAGCATT CTCCAAAATC CTAGTCACAC ACAGTCCAGA GAATGAGGGC
  TAGGCCTCTC TCTGTCCCTT TCGGGCCTCA ATTTTCTCAT TCTGTAAAAT GGGGTTAAAA
  TACGTTTTGT ATTTGCTGTC TTTGTCAGAC AAAACCTATA TCCTGGCATC TAGTAGGTGC
  TCCATACACG ACATAGACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758854	NES09152638	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G		G	T	T	T		G
ss321333901	CHEV_4_132065007	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27556762					SNP	T	T	T	T	T	T	G	T	T	G	G	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758854	NES09152638	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132236403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	360 bp proximal
Gm12981	predicted gene 12981	within coordinates
Rr377205	regulatory region 377205	1089 bp downstream
Rr377206	regulatory region 377206	within coordinates
Rr600989	regulatory region 600989	1407 bp distal
Rr600990	regulatory region 600990	112 bp proximal
Rr600991	regulatory region 600991	547 bp proximal
Rr600992	regulatory region 600992	1399 bp proximal
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	1364 bp downstream
Tssr43679	transcription start site region 43679	1392 bp downstream
Tssr43680	transcription start site region 43680	1401 bp downstream