rs27557435 SNP Detail

Summary

• ID
  rs27557435
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130663989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCAAGAG GAGCGAAGGA
  CAGGTCGTGC TAAGTAACAG CTGGTCCAGA ATACAGTTGT AGAATGTACA GGACCACCAT
  GGTGGGGAAG GGGATGGGCT CAGTGTTCTG TCAGCTGAGA CCAGTGGAGG CAGGCAGGGG
  CCCCTGCACA GCAGGACTCT GCTTGCTCAC CCTGAGAGCA TACCTTGAAT GAAGATGGAT
  K
  TGAACCACAG AAATCATAGC GAGCCCATCA TGCCCAGTCT TCCCAAAGGT GGCACTGATG
  CTTCTCAGCT CTCAGCCCAG AGGGAAAGTC CAGGGAGCGG AACCCAAGGC TGATGTTCTC
  CCGATCTTGC GTCTCTTTGC CTTTGTCTAT CTGCTGAGTA GCTGAGTACC TATCTGGAAG
  GGACTTCATG AGACAGCTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752857	NES09161774	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557435					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752857	NES09161774	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130663989 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	530 bp downstream
Tssr39340	transcription start site region 39340	1957 bp downstream
Tssr39341	transcription start site region 39341	1939 bp downstream
Tssr39342	transcription start site region 39342	1853 bp downstream
Tssr39343	transcription start site region 39343	1832 bp downstream
Tssr39344	transcription start site region 39344	1771 bp downstream
Tssr39345	transcription start site region 39345	1734 bp downstream
Tssr39346	transcription start site region 39346	1719 bp downstream
Tssr39347	transcription start site region 39347	1165 bp downstream
Tssr39348	transcription start site region 39348	647 bp downstream
Tssr39349	transcription start site region 39349	609 bp downstream
Tssr43606	transcription start site region 43606	1846 bp upstream
Tssr43607	transcription start site region 43607	1564 bp upstream
Tssr43608	transcription start site region 43608	539 bp upstream