rs27557438 SNP Detail

Summary

• ID
  rs27557438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130663535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTACACCC TGCCTGTGGT
  GTAGATGGGG CTGCAGGGCT GAAAAGTTCC CACTGTACCT GTGTCATTGC TTGTGTATGA
  CTTGGAAGAA GGGCCAATAA AGCAACTGCA AGCTTTGCTC TGTCTCATGT GGTTCTTGAA
  GGGTGATATA GGGACAGAGG ACCTGCCTCT GTCCTCCAGT ATTCATTACT CCAGCACACA
  K
  GTGCACATCA CGTCTGCCCC ACCCCCCAGG GCCTGGCCAG CTTGCCAGTG TCACCTCCTG
  AAGCTATGTG AGCATCCCCA CATCTCCCAG TTGACAAGGG GAAAGATGGC CTCCAGCCAG
  GGCCTGCTCT GGATCCTGGG GATACACAGG CTGGGGCTGG GAGACAGGTC CATACCCTGT
  GGACATCAGC CAGTGCTGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752860	NES09161765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557438					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752860	NES09161765	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130663535 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	76 bp downstream
Tssr39332	transcription start site region 39332	1756 bp downstream
Tssr39333	transcription start site region 39333	1741 bp downstream
Tssr39334	transcription start site region 39334	1692 bp downstream
Tssr39335	transcription start site region 39335	1674 bp downstream
Tssr39336	transcription start site region 39336	1658 bp downstream
Tssr39337	transcription start site region 39337	1631 bp downstream
Tssr39338	transcription start site region 39338	1598 bp downstream
Tssr39339	transcription start site region 39339	1551 bp downstream
Tssr39340	transcription start site region 39340	1503 bp downstream
Tssr39341	transcription start site region 39341	1485 bp downstream
Tssr39342	transcription start site region 39342	1399 bp downstream
Tssr39343	transcription start site region 39343	1378 bp downstream
Tssr39344	transcription start site region 39344	1317 bp downstream
Tssr39345	transcription start site region 39345	1280 bp downstream
Tssr39346	transcription start site region 39346	1265 bp downstream
Tssr39347	transcription start site region 39347	711 bp downstream
Tssr39348	transcription start site region 39348	193 bp downstream
Tssr39349	transcription start site region 39349	155 bp downstream
Tssr43605	transcription start site region 43605	1651 bp upstream
Tssr43606	transcription start site region 43606	1392 bp upstream
Tssr43607	transcription start site region 43607	1110 bp upstream
Tssr43608	transcription start site region 43608	85 bp upstream