rs27557439 SNP Detail

Summary

• ID
  rs27557439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130663304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTATGGTGG CAGCAAGGAG GGTCAGTTCA TATGCCTCTG CTGGCTTTTC
  Y
  ATCGCTAGGG GTTGCTAGGG GTTGCTAGGG ATCTACACCC TGCCTGTGGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752861	NES09161762	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557439					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752861	NES09161762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130663304 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	1525 bp downstream
Tssr39333	transcription start site region 39333	1510 bp downstream
Tssr39334	transcription start site region 39334	1461 bp downstream
Tssr39335	transcription start site region 39335	1443 bp downstream
Tssr39336	transcription start site region 39336	1427 bp downstream
Tssr39337	transcription start site region 39337	1400 bp downstream
Tssr39338	transcription start site region 39338	1367 bp downstream
Tssr39339	transcription start site region 39339	1320 bp downstream
Tssr39340	transcription start site region 39340	1272 bp downstream
Tssr39341	transcription start site region 39341	1254 bp downstream
Tssr39342	transcription start site region 39342	1168 bp downstream
Tssr39343	transcription start site region 39343	1147 bp downstream
Tssr39344	transcription start site region 39344	1086 bp downstream
Tssr39345	transcription start site region 39345	1049 bp downstream
Tssr39346	transcription start site region 39346	1034 bp downstream
Tssr39347	transcription start site region 39347	480 bp downstream
Tssr39348	transcription start site region 39348	10 bp upstream
Tssr39349	transcription start site region 39349	55 bp upstream
Tssr43605	transcription start site region 43605	1420 bp upstream
Tssr43606	transcription start site region 43606	1161 bp upstream
Tssr43607	transcription start site region 43607	879 bp upstream
Tssr43608	transcription start site region 43608	143 bp downstream