rs27557440 SNP Detail

Summary

• ID
  rs27557440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130663254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG AGTTGGCCAG AGTCATGTGT
  Y
  CTATGGTGGC AGCAAGGAGG GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37752862	NES09161760	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	C	T		T	T	T	T		C
ss45663496	mCV25035937	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss147462742	ENSMUSSNP1454921	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321319094	CHEV_4_130491858	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27557440					SNP	C	C	T	T	T	C	T	C	T	C	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752862	NES09161760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130663254 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	mRNA-UTR
Tssr39332	transcription start site region 39332	1475 bp downstream
Tssr39333	transcription start site region 39333	1460 bp downstream
Tssr39334	transcription start site region 39334	1411 bp downstream
Tssr39335	transcription start site region 39335	1393 bp downstream
Tssr39336	transcription start site region 39336	1377 bp downstream
Tssr39337	transcription start site region 39337	1350 bp downstream
Tssr39338	transcription start site region 39338	1317 bp downstream
Tssr39339	transcription start site region 39339	1270 bp downstream
Tssr39340	transcription start site region 39340	1222 bp downstream
Tssr39341	transcription start site region 39341	1204 bp downstream
Tssr39342	transcription start site region 39342	1118 bp downstream
Tssr39343	transcription start site region 39343	1097 bp downstream
Tssr39344	transcription start site region 39344	1036 bp downstream
Tssr39345	transcription start site region 39345	999 bp downstream
Tssr39346	transcription start site region 39346	984 bp downstream
Tssr39347	transcription start site region 39347	430 bp downstream
Tssr39348	transcription start site region 39348	60 bp upstream
Tssr39349	transcription start site region 39349	105 bp upstream
Tssr43605	transcription start site region 43605	1370 bp upstream
Tssr43606	transcription start site region 43606	1111 bp upstream
Tssr43607	transcription start site region 43607	829 bp upstream
Tssr43608	transcription start site region 43608	193 bp downstream