rs27557443 SNP Detail

Summary

• ID
  rs27557443
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130663057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATCCCTT CCCATGAGCC ACTGCTCTGA TGGCAAGCTG
  TCCTTATCTT CAGTCAAGTG TTCCCTAGGG CCACACAGTG GTGAGGTCCC TGCAAGAGTC
  M
  CTTTAGCCTG GCAGATTTAG GGTCTGGTGA TCACACATCC CAGCGGCCAG GTTGCTTCAG
  CTTGCTTGCC CTGGGCTACG CTCAGGGGAT GGCAGGTTTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752865	NES09161756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557443					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752865	NES09161756	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130663057 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	1278 bp downstream
Tssr39333	transcription start site region 39333	1263 bp downstream
Tssr39334	transcription start site region 39334	1214 bp downstream
Tssr39335	transcription start site region 39335	1196 bp downstream
Tssr39336	transcription start site region 39336	1180 bp downstream
Tssr39337	transcription start site region 39337	1153 bp downstream
Tssr39338	transcription start site region 39338	1120 bp downstream
Tssr39339	transcription start site region 39339	1073 bp downstream
Tssr39340	transcription start site region 39340	1025 bp downstream
Tssr39341	transcription start site region 39341	1007 bp downstream
Tssr39342	transcription start site region 39342	921 bp downstream
Tssr39343	transcription start site region 39343	900 bp downstream
Tssr39344	transcription start site region 39344	839 bp downstream
Tssr39345	transcription start site region 39345	802 bp downstream
Tssr39346	transcription start site region 39346	787 bp downstream
Tssr39347	transcription start site region 39347	233 bp downstream
Tssr39348	transcription start site region 39348	257 bp upstream
Tssr39349	transcription start site region 39349	302 bp upstream
Tssr43605	transcription start site region 43605	1173 bp upstream
Tssr43606	transcription start site region 43606	914 bp upstream
Tssr43607	transcription start site region 43607	632 bp upstream
Tssr43608	transcription start site region 43608	390 bp downstream