rs27557444 SNP Detail

Summary

• ID
  rs27557444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGGGAAGTCC AACAGTCTCG CCGCTGGCCT GAACATCCTG TTCAGCGTGG
  R
  AAAAAAAATG TTGCTTCTGT TTTAAATAAT CCCTTCCCAT GAGCCACTGC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752866	NES09161755	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	A	A	G	G	A	A
ss45584439	mCV25035753	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G
ss147462732	ENSMUSSNP4179412	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557444					SNP	A	A	G	G	G	G	G	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752866	NES09161755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662931 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	1152 bp downstream
Tssr39333	transcription start site region 39333	1137 bp downstream
Tssr39334	transcription start site region 39334	1088 bp downstream
Tssr39335	transcription start site region 39335	1070 bp downstream
Tssr39336	transcription start site region 39336	1054 bp downstream
Tssr39337	transcription start site region 39337	1027 bp downstream
Tssr39338	transcription start site region 39338	994 bp downstream
Tssr39339	transcription start site region 39339	947 bp downstream
Tssr39340	transcription start site region 39340	899 bp downstream
Tssr39341	transcription start site region 39341	881 bp downstream
Tssr39342	transcription start site region 39342	795 bp downstream
Tssr39343	transcription start site region 39343	774 bp downstream
Tssr39344	transcription start site region 39344	713 bp downstream
Tssr39345	transcription start site region 39345	676 bp downstream
Tssr39346	transcription start site region 39346	661 bp downstream
Tssr39347	transcription start site region 39347	107 bp downstream
Tssr39348	transcription start site region 39348	383 bp upstream
Tssr39349	transcription start site region 39349	428 bp upstream
Tssr43605	transcription start site region 43605	1047 bp upstream
Tssr43606	transcription start site region 43606	788 bp upstream
Tssr43607	transcription start site region 43607	506 bp upstream
Tssr43608	transcription start site region 43608	516 bp downstream