rs27557445 SNP Detail

Summary

• ID
  rs27557445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTTGATC TGTTTGGCCA
  GGCAGCAGCA GGAAGAGAAT CTGGCCAAGC AATAGTTCCT GGTGTCAGTT TATACTCAGC
  TGTCAGACGA CAGGATGGGT CATGATTGTG GTGCCCGTTT GCCACCTCCA GTACCCCAAA
  AGTGTACAAA CAAAACAATT CCTTCAAATA GCTTGCTTAA ATAGCGATTC AGCCAACTGC
  Y
  GTCATTAGGA ATTATGATAA AATCTAGTAA GAAACTGAGG AGAAAAAGAA ATAGAAACGG
  AGCCCCTCCC ACCACTCACT GCAGTGCTCA CCATGGAGCC CCTCCCACCA CTCATTGCAG
  TGCTCACCAT GGAGCCCCTC CCACCACTCA CTGCAGTGCT CACCATGGAG CCCCTCCCAC
  CACTCACTGC AGTGCTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752867	NES09161754	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557445					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752867	NES09161754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662349 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	570 bp downstream
Tssr39333	transcription start site region 39333	555 bp downstream
Tssr39334	transcription start site region 39334	506 bp downstream
Tssr39335	transcription start site region 39335	488 bp downstream
Tssr39336	transcription start site region 39336	472 bp downstream
Tssr39337	transcription start site region 39337	445 bp downstream
Tssr39338	transcription start site region 39338	412 bp downstream
Tssr39339	transcription start site region 39339	365 bp downstream
Tssr39340	transcription start site region 39340	317 bp downstream
Tssr39341	transcription start site region 39341	299 bp downstream
Tssr39342	transcription start site region 39342	213 bp downstream
Tssr39343	transcription start site region 39343	192 bp downstream
Tssr39344	transcription start site region 39344	131 bp downstream
Tssr39345	transcription start site region 39345	94 bp downstream
Tssr39346	transcription start site region 39346	79 bp downstream
Tssr39347	transcription start site region 39347	454 bp upstream
Tssr39348	transcription start site region 39348	965 bp upstream
Tssr39349	transcription start site region 39349	1010 bp upstream
Tssr43605	transcription start site region 43605	465 bp upstream
Tssr43606	transcription start site region 43606	206 bp upstream
Tssr43607	transcription start site region 43607	34 bp downstream
Tssr43608	transcription start site region 43608	1098 bp downstream